Page Comparison

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1. Go to Recent Experiments
2. Select an experiment that has a "Complete" under Experiment Status
3. Scroll Down and click on the output "Gaussian.log" file and it should download the file 
4. Under the "Molecular Editors" menu select Jamberoo
5. Under "File" menu in Jamberoo Choose "Open As" →  Gaussian→ Gaussian (03) Output
   
   1. From the file browser chose one of the logfiles from recent runs 
      available in SEAGrid → Experiment Data → Experiment Folder→ gaussian.log file
   2. Depending on the run you have one or more choices ( for example opt freq runs result in two choices )
   3. For choice #2 corresponding to Freq run select this and 
      
      1. Select OK 
      2.  Select OK again for the vibrational modes and Infrared spectrum 
      3. A vibrational control panel should appear
         1. Select a Frequency of interest (highest) 
         2. checkbox before "Animate Vibrations"
            this should show vibrational mode
         3. select displacement vectors and this should add displacement vector lines on atoms

Under 

Avagadro Based post Processing

1. Start Avagadro by running the Avagadro Application
2. Under File menu Open the previous log file from SEAGrid → Experiment Data → Experiment Folder→ gaussian.log
3. Under Extension Select Spectra 
   1. One can change the Gaussian widths and other plot variables under Advanced setting